Selected Publicationscp

Pengfei Zhang, Michael Cai, Seojin Bang, Heewook Lee. Context-Aware Amino Acid Embedding Advances Analysis of TCR-Epitope Interactions. eLife.
doi: https://doi.org/10.1101/2023.04.12.536635

Michael Cai, Seojin Bang, Pengfei Zhang, Heewook Lee. ATM-TCR: TCR-epitope binding affinity prediction using a multi-head self-attention model. Frontiers in Immunology July 2022.
doi: https://doi.org/10.3389/fimmu.2022.893247

Jiao Pan, Weiyi Li, Jiahao Ni, Kun Wu, Iain Konigsberg, Caitlyn E Rivera, Clayton Tincher, Colin Gregory, Xia Zhou, Thomas G Doak, Heewook Lee, Yan Wang, Xiang Gao, Michael Lynch, Hongan Long. Rates of Mutations and Transcript Errors in the Foodborne Pathogen Salmonella enterica subsp. enterica. Molecular biology and evolution 2022 April.
doi: 10.1093/molbev/msac081

Pengfei Zhang, Seojin Bang, Heewook Lee. PiTE: TCR-epitope binding affinity prediction pipeline using Transformer-based Sequence Encoder. American Society for Microbiology 2021.
doi: https://doi.org/10.1142/9789811270611_0032

Patricia L Foster, Brittany A Niccum, Heewook Lee. DNA Replication-Transcription Conflicts Do Not Significantly Contribute to Spontaneous Mutations Due to Replication Errors in Escherichia coli. American Society for Microbiology 2021.
doi: https://doi.org/10.1128/mbio.02503-21

Danielle Jacobs, Troy McDaniel, Arvind Varsani, Rolf U Halden, Stephanie Forrest, Heewook Lee. Wastewater monitoring raises privacy and ethical considerations. IEEE Transactions on Technology and Society 2021.
doi: https://doi.org/10.1109/TTS.2021.3073886

Seojin Bang, Pengtao Xie, Heewook Lee, Wei Wu, Eric Xing. Explaining a black-box using deep variational information bottleneck approach. 2021.
doi: https://doi.org/10.1609/aaai.v35i13.17358